SubtiBank SubtiBank
yvgT [2019-07-10 11:23:19]
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yvgT [2019-07-10 11:23:19]

potential TRIC transporter
locus
BSU33460
pI
8.87
mw
21.57 kDa
protein length
202 aa Sequence Blast
gene length
609 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,436,849 3,437,457

    The protein

    Protein family

  • UPF0126 family (according to Swiss-Prot)

    • Structure

  • [PDB|5WTR] (from Saccharolobus solfataricus, 37% identity)

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|ADF4EDD1C84ABF374DD3DBBAA41539F5874F4926|yvgT]
    description
    [Pubmed|22383849]

    regulatory mechanism

  • [protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA]: repression, [Pubmed|25755103], in [regulon|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA regulon]
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    Biological materials

    Mutant

  • MGNA-A457 (yvgT::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/457 NBRP B. subtilis, Japan]
  • BKE33460 ([gene|ADF4EDD1C84ABF374DD3DBBAA41539F5874F4926|yvgT]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33460 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTGATGACTCCCTTTT, downstream forward: _UP4_TAATAGCAAAAAAACCGATT
  • BKK33460 ([gene|ADF4EDD1C84ABF374DD3DBBAA41539F5874F4926|yvgT]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33460 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTGATGACTCCCTTTT, downstream forward: _UP4_TAATAGCAAAAAAACCGATT

    • References

  • 21519847,25755103